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Service Software Downloads
Gene finding and splice sites
EasyGene
Gene finding in prokaryotes
Version 1.2c
Linux
HMMgene
Prediction of vertebrate and C. elegans genes
Version 1.1
SunOS
OSF1
Linux
IRIX
NetGene2
Intron splice sites in human, C. elegans and A. thaliana DNA
Version 2.42
src
NetStart
Translation start in vertebrate and A. thaliana DNA
Version 1.0c
Linux
IRIX
Promoter
Transcription start sites in vertebrate DNA
Version 2.0
SunOS
Linux
IRIX
RNAmmer
Prediction of ribosomal RNA sub units
Version 1.2
Unix
Immunological features
LYRA
Lymphocyte receptor automated modelling
Version 1.0
ALL
TCRpMHCmodels
Structural modeling tool of TCR-pMHC class I and class II complexes
Version 1.0
ALL
VDJSolver
Analysis of human immunoglobulin VDJ recombination
Version 1.0b
Linux
IRIX64
BepiPred
Prediction of potential B-cell epitopes from protein sequence
Version 3.0b
src
Version 2.0c
ALL
Version 1.0c
Linux
IRIX
DiscoTope
Improved B-cell epitope prediction using AlphaFold2 modeling and inverse folding latent representations
Version 3.0
All
Version 1.1a
src
ICERFIRE
ICORE-based prediction of neo-epitope immunogenicity.
Version 1.0a
ALL
MAIT Match
Calculate similarity between CDR3 sequences and a reference database of MAIT sequences
Version 1.0
Linux
Darwin
MHCMotifDecon
Motif deconvolution of Multi-allele immunopetidomics data
Version 1.2b
ALL
Version 1.2a
ALL
Version 1.0a
ALL
NetAllergen
Protein allergenicity prediction
Version 1.0
Linux
NetBoLApan
Prediction of peptide interactions with bovine MHC class I (BoLA) molecules.
Version 1.0a
Linux
NetCTL
Predection of CTL epitopes in protein sequences
Version 1.2b
Linux
IRIX64
Darwin
Version 1.2a
Linux
NetCTLpan
Pan-specific integrated class I antigen presentation
Version 1.1b
Linux
Darwin
NetH2pan
Prediction of peptide interactions with murine MHC class I (H2) molecules.
Version 1.0a
Linux
Darwin
NetMHC
NetMHC: Binding of peptides to MHC class I molecules
Version 4.0a
Linux
Darwin
Version 3.4a
Linux
IRIX64
Darwin
Version 3.0c
Linux
IRIX64
Darwin
NetMHCII
Binding of peptides to MHC class II molecules
Version 2.3
Linux
Darwin
Version 2.2
Linux
IRIX
Darwin
NetMHCIIpan
Pan-specific binding of peptides to MHC class II mocules of known sequence
Version 4.3d
Linux
Darwin_x86_64
Darwin_arm64
Version 4.2c
Linux
Darwin_x86_64
Darwin_arm64
Version 4.1a
Linux
Darwin
Version 4.0
Linux
Darwin
Version 3.2
Linux
Darwin
Version 3.1a
Linux
Darwin
Version 3.0c
Linux
Darwin
Version 2.0b
Linux
Darwin
NetMHCcons
Binding of peptides to any known MHC class I molecule
Version 1.1a
Linux
Darwin
NetMHCpan
Pan-specific binding of peptides to MHC class I alleles of known sequence
Version 4.1b
Linux
Darwin
Version 4.0a
Linux
Darwin
Version 3.0a
Linux
Darwin
Version 2.8a
Linux
IRIX
Darwin
Version 2.8
src
Version 2.4a
Linux
IRIX
Darwin
NetMHCpanExp
Pan-specific binding of peptides to MHC class I proteins of known sequence including antigen expression
Version 1.0
Linux
Darwin
NetMHCphosPan
Pan-specific binding of phosphorylated peptides to HLA class I molecules.
Version 1.0a
Linux
Darwin
NetMHCstab
Stability of peptide:MHC-I complexes
Version 1.0a
Linux
Darwin
NetMHCstabpan
Pan-specific stability of peptide:MHC-I complexes
Version 1.0b
Linux
Version 1.0a
Darwin
NetTepi
T-cell epitopes restricted to prevalent HLA-A and HLA-B molecules
Version 1.0
src
NetChop
Proteasomal cleavages (MHC ligands)
Version 3.1d
Linux
Darwin
NNAlign
Identifying sequence motifs in quantitative peptide data
Version 2.1a
Linux
Darwin
PickPocket
Binding of peptides to any known MHC class I molecule using binding pocket matrix extrapolation
Version 1.1a
Linux
Darwin
Post-translational modifications of proteins
NetCGlyc
C-mannosylation sites in mammalian proteins
Version 1.0c
Linux
IRIX
NetNGlyc
N-linked glycosylation sites in human proteins
Version 1.0d
Linux
Version 1.0d
Linux
NetOGlyc
O-GalNAc (mucin type) glycosylation sites in mammalian proteins
Version 4.0
Unix
Version 3.1e
SunOS
OSF1
Linux
IRIX64
IRIX
AIX
NetPhos
Generic phosphorylation sites in eukaryotic proteins
Version 3.1
SunOS
Linux
NetPhospan
Prediction of phosphorylation using convolutional neural networks (CNNs).
Version 1.0
Linux
ProP
Arginine and lysine propeptide cleavage sites in eukaryotic protein sequences
Version 1.0c
SunOS
OSF1
Linux
IRIX
AIX
YinOYang
O-(beta)-GlcNAc glycosylation and Yin-Yang sites (intracellular/nuclear proteins)
Version 1.2
SunOS
OSF1
Linux
IRIX
Protein function and structure
Cofactory
Identification of Rossmann folds and prediction of FAD, NAD and NADP specificity
Version 1.0
Linux
NetSurfP
Protein secondary structure and relative solvent accessibility
Version 3.0
Linux
Version 2.0
Linux
Version 1.0d
Linux
IRIX64
NetTurnP
Amino acid predection in β-turns and β-turn types in proteins
Version 1.0a
Linux
TMHMM
Prediction of transmembrane helices in proteins
Version 2.0c
SunOS
OSF1
Linux
IRIX64
IRIX32
AIX
Protein sorting
ChloroP
Chloroplast transit peptides and their cleavage sites in plant proteins
Version 1.1
SunOS
OSF1
Linux
IRIX
DeepLoc
Prediction of eukaryotic protein subcellular localization using deep learning
Version 2.0
All
Version 1.0
All
LipoP
Signal peptidase I & II cleavage sites in gram- bacteria
Version 1.0a
Linux
Msrescue
A Computational Pipeline to Increase the Quality and Yield of Immunopeptidomics Experiments
Version 1.1a
Linux
NetNES
Leucine-rich nuclear export signals (NES) in eukaryotic proteins
Version 1.1
SunOS
OSF1
Linux
IRIX64
IRIX
AIX
SecretomeP
Prediction of non-classical protein secretion
Version 1.0h
SunOS
Linux
IRIX
SignalP
Signal peptide and cleavage sites in gram+, gram- and eukaryotic amino acid sequences
Version 6.0h
slow_sequential
fast
Version 5.0b
Linux
Darwin
Version 4.1g
Linux
IRIX64
Darwin
CYGWIN
Version 3.0
SunOS
OSF1
Linux
IRIX
AIX
Version 2.0
SunOS
OSF1
Linux
IRIX
AIX
TargetP
Subcellular location of proteins: mitochondrial, chloroplastic, secretory pathway, or other
Version 2.0
Linux
Darwin
Version 1.1b
SunOS
OSF1
Linux
IRIX
AIX
TatP
Presence and location of Twin-arginine signal peptides
Version 1.0b
Linux
IRIX64
Miscellaneous
OligoWiz
Design of oligonucleotides for DNA microarrays
Version 2.0
src
ProtParts
Protein clustering and partitioning
Version 1.0
Python
Bioinformatic Tool Software Downloads
GibbsCluster
Simultaneous alignment and clustering of peptide data
Version 2.0f
Linux
Darwin
Version 1.1b
Linux
Darwin
Seq2Logo
Sequence logo generator
Version 2.1
all
Version 2.0
all
Dataset Downloads
NetStart
Translation initiation site data sets
Version 1.0c
Linux
IRIX