Browse Database

Browse the database consisting of PfEMP1 from seven P. falciparum genomes (3D7, DD2, HB3, IT4, PFCLIN, IGH, RAJ116) and related proteins (see reference below for details).

Press submit to see all proteins with all homology blocks, or filter output by filling one or more fields below.

Protein display filter

Protein IDs (part or whole ID, comma separated)

Example: PFL0030c,HB3,REICH   (write 3D7 to see all PfEMP1 from the 3D7 genome)

AND
Homology blocks (exact name or number, comma separated)

Example: 255,341,295   (To get HB11 just submit: 11)

AND
UPS-group (part or whole group-name, comma separated)

Example: UPSA,UPSE   (NOTE queries are case sensitive)

AND
Phylogenetic domain class (exact class-names, comma separated)

Example: NTSA1,DBLg12   (NOTE queries are case sensitive)

Homology block display filter

only show these HBs (exact name or number, comma separated)

Example: 11,13

CITATIONS

For publication of results, please cite:

Plasmodium falciparum erythrocyte membrane protein 1 diversity in seven genomes - divide and conquer
Rask TS, Hansen DA, Theander TG, Gorm Pedersen A, Lavstsen T
PLoS Computational Biology 2010 Sep;6(9). pii: e1000933. link