Domain and Homology Block Prediction

Submit your protein sequences for prediction of PfEMP1 domains and homology blocks.

Paste a single sequence or several sequences in FASTA format into the field below:

Submit a file in FASTA format directly from your local disk:

Lower bit-score threshold for homology blocks   
(default is gathering cut-off = 9.97)

At most 2000 sequences per submission; each sequence not more than 10,000 amino acids.
Total number of amino acids can not exceed 400,000.

The sequences are kept confidential and will be deleted after processing.


For publication of results, please cite:

Plasmodium falciparum erythrocyte membrane protein 1 diversity in seven genomes - divide and conquer
Rask TS, Hansen DA, Theander TG, Gorm Pedersen A, Lavstsen T
PLoS Computational Biology 2010 Sep;6(9). pii: e1000933. link