Output format

DESCRIPTION

For each input sequence the name and length are first printed, followed by a table in the form:

Position Score Likelihood

where 'Position' is a position in the sequence, 'Score' is the prediction score for a transcription start site occurring within 100 base pairs upstream from that position and 'Likelihood' is a descriptive label associated with that score. The scores are always positive numbers; they are labelled as follows:

below 0.5 ignored
0.5 - 0.8 Marginal prediction
0.8 - 1.0 Medium likely prediction
above 1.0 Highly likely prediction

Consult the performance notes for comments on the prediction scores.

The input sequence will be included in the output, preceeding the predictions if "Full output" has been selected.

EXAMPLE OUTPUT

Promoter 2.0 Prediction Results INPUT SEQUENCE: >gi_209811_gb_J01917_ADRCG Adenovirus type 2, complete genome. CATCATCATAATATACCTTATTTTGGATTGAAGCCAATATGATAATGAGGGGGTGGAGTT TGTGACGTGGCGCGGGGCGTGGGAACGGGGCGGGTGACGTAGTAGTGTGGCGGAAGTGTG ATGTTGCAAGTGTGGCGGAACACATGTAAGCGCCGGATGTGGTAAAAGTGACGTTTTTGG TGTGCGCCGGTGTATACGGGAAGTGACAATTTTCGCGCGGTTTTAGGCGGATGTTGTAGT AAATTTGGGCGTAACCAAGTAATGTTTGGCCATTTTCGCGGGAAAACTGAATAAGAGGAA GTGAAATCTGAATAATTCTGTGTTACTCATAGCGCGTAATATTTGTCTAGGGCCGCGGGG ACTTTGACCGTTTACGTGGAGACTCGCCCAGGTGTTTTTCTCAGGTGTTTTCCGCGTTCC GGGTCAAAGTTGGCGTTTTATTATTATAGTCAGCTGACGCGCAGTGTATTTATACCCGGT GAGTTCCTCAAGAGGCCACTCTTGAGTGCCAGCGAGTAGAGTTTTCTCCTCCGAGCCGCT CCGACACCGGGACTGAAAATGAGACATATTATCTGCCACGGAGGTGTTATTACCGAAGAA ATGGCCGCCAGTCTTTTGGACCAGCTGATCGAAGAGGTACTGGCTGATAATCTTCCACCT CCTAGCCATTTTGAACCACCTACCCTTCACGAACTGTATGATTTAGACGTGACGGCCCCC GAAGATCCCAACGAGGAGGCGGTTTCGCAGATTTTTCCCGAGTCTGTAATGTTGGCGGTG CAGGAAGGGATTGACTTATTCACTTTTCCGCCGGCGCCCGGTTCTCCGGAGCCGCCTCAC CTTTCCCGGCAGCCCGAGCAGCCGGAGCAGAGAGCCTTGGGTCCGGTTTCTATGCCAAAC CTTGTGCCGGAGGTGATCGATCTTACCTGCCACGAGGCTGGCTTTCCACCCAGTGACGAC GAGGATGAAGAGGGTGAGGAGTTTGTGTTAGATTATGTGGAGCACCCCGGGCACGGTTGC AGGTCTTGTCATTATCACCGGAGGAATACGGGGGACCCAGATATTATGTGTTCGCTTTGC TATATGAGGACCTGTGGCATGTTTGTCTACAGTAAGTGAAAATTATGGGCAGTCGGTGAT AGAGTGGTGGGTTTGGTGTGGTAATTTTTTTTTAATTTTTACAGTTTTGTGGTTTAAAGA PREDICTED TRANSCRIPTION START SITES: gi_209811_gb_J01917_ADRCG Adenovirus type 2, complete genome., 1200 nucleotides Position Score Likelihood 600 1.063 Highly likely prediction

below 0.5	ignored
0.5 - 0.8	Marginal prediction
0.8 - 1.0	Medium likely prediction
above 1.0	Highly likely prediction