MHC class I data format

Peptide  HLA  [Genotype]  [Binding core]

where Genotype and Binding core are optional. Genotype corresponds to the source protein ID that the given epitope is found in.
If the binding core column is not included, make sure to check the option named 'MHC class I - No binding core column'.
Example input (with genotypes)

FQSASKIITL	HLA-A02:06	BCA87362.1
FQSASKIITL	HLA-A02:06	QHZ00380.1
QSASKIITL	HLA-C12:03	QIZ16548.1

MHC class II data format

Peptide  HLA  [Genotype]  [Binding core]

where Genotype and Binding core are optional. Genotype corresponds to the source protein ID that the given epitope is found in.
If the binding core column is not included, make sure to check the option named 'MHC class II - No binding core column'. 
Example input (with genotypes and binding cores)

KKRWQLALSKGVHFV	DRB1_0701	BCD57644.1	WQLALSKGV
KKRWQLALSKGVHFV	DRB1_0101	BCD57644.1	WQLALSKGV
CIPYNSVTSSIVITS	DRB1_0701	QIQ08831.1	YNSVTSSIV

Allele frequencies data format

HLA  Locus  MHC_class  Frequency

where HLA is the allele name, Locus is the allele's locus, MHC_class is either 1 or 2, and Frequency is the allelic frequency.
Make sure that the allele names in your allele frequency input are written the same way as in your HLA binder input data.
Example input

HLA-A01:01	HLA-A	1	0.1193
HLA-B08:01	HLA-B	1	0.0761
HLA-C01:02	HLA-C	1	0.0512
DRB1_0701	DRB1	2	0.095725

Protein sequence data format

You can upload protein sequences either in FASTA format:

>Header
Sequence
⋮

Or simply with one protein sequence per line (no headers):

Sequence
Sequence
⋮