MHC class I data format

Peptide  HLA  [Genotype]  [Binding core]

where Genotype and Binding core are optional. Genotype corresponds to the source protein ID that the given epitope is found in.
If the binding core column is not included, make sure to check the option named 'MHC class I - No binding core column'.
Example input (with genotypes)
FQSASKIITL HLA-A02:06 BCA87362.1 FQSASKIITL HLA-A02:06 QHZ00380.1 QSASKIITL HLA-C12:03 QIZ16548.1

MHC class II data format

Peptide  HLA  [Genotype]  [Binding core]

where Genotype and Binding core are optional. Genotype corresponds to the source protein ID that the given epitope is found in.
If the binding core column is not included, make sure to check the option named 'MHC class II - No binding core column'.
Example input (with genotypes and binding cores)
KKRWQLALSKGVHFV DRB1_0701 BCD57644.1 WQLALSKGV KKRWQLALSKGVHFV DRB1_0101 BCD57644.1 WQLALSKGV CIPYNSVTSSIVITS DRB1_0701 QIQ08831.1 YNSVTSSIV

Allele frequencies data format

HLA  Locus  MHC_class  Frequency

where HLA is the allele name, Locus is the allele's locus, MHC_class is either 1 or 2, and Frequency is the allelic frequency.
Make sure that the allele names in your allele frequency input are written the same way as in your HLA binder input data.
Example input
HLA-A01:01 HLA-A 1 0.1193 HLA-B08:01 HLA-B 1 0.0761 HLA-C01:02 HLA-C 1 0.0512 DRB1_0701 DRB1 2 0.095725

Protein sequence data format

You can upload protein sequences either in FASTA format:

>Header
Sequence

Or simply with one protein sequence per line (no headers):

Sequence
Sequence