November 2015: The OligoWiz server is currently offline. As a lot of work will be needed to recode the backend to a new server architecture and queuing system and since the usage of the server has been decreasing steadily due to the migration to RNA seq, it is unknown when and if the server will be back online.
Rasmus Wernersson, Agnieszka S. Junkcer and Henrik Bjorn Nielsen
Probe selection for DNA microarrays using OligoWiz
Nat Protoc. 2007;2(11):2677-91
If you don't have access to Nature Protocols you can request a reprint (PDF) by emailing to this address:
oligowiz@cbs.dtu.dk.
OligoWiz 2.0 - integrating sequence feature annotation into design of microarray probes
Rasmus Wernersson and Henrik Bjørn Nielsen.
Nucleic Acids Research, 2005, Vol. 33, Web Server issue W611-W615
Design of oligonucleotides for microarrays and perspectives for design
of multi-transcriptome arrays.
Henrik Bjørn Nielsen, Rasmus Wernersson and Steen Knudsen.
Nucleic Acids Research, 2003, Vol. 31, No. 13 3491-3496