Output format



DESCRIPTION

The prediction output consists of 9 columns.

  • Residue number
  • HLA Allele
  • Peptide sequence
  • Protein identifier
  • NetMHCpan prediction score
  • NetMHCstab prediction score
  • T-cell propensity score
  • NetTepi combined prediction score
  • %Rank of prediction score to a set of 100.000 random natural 9mer peptides



  • EXAMPLE OUTPUT

    
    
    # NetTepi version 1.0
    
    # Input is in FASTA format
    
    # Peptide lengths: 9
    
    ----------------------------------------------------------------------------------------------------
     Pos       Allele      Peptide          Identity      Aff     Stab    Tcell     Comb   %Rank
    ----------------------------------------------------------------------------------------------------
       0   HLA-A02:01    ASQKRPSQR   seq2_optional_c    0.020    0.005   -0.422   -0.027   50.00       
       1   HLA-A02:01    SQKRPSQRH   seq2_optional_c    0.019    0.006   -0.252   -0.010   50.00       
       2   HLA-A02:01    QKRPSQRHG   seq2_optional_c    0.013    0.005   -0.202   -0.010   50.00       
       3   HLA-A02:01    KRPSQRHGS   seq2_optional_c    0.021    0.007   -0.187   -0.002   50.00       
       4   HLA-A02:01    RPSQRHGSK   seq2_optional_c    0.018    0.004   -0.157   -0.002   50.00