Output format

DESCRIPTION

The prediction output consists of 9 columns.

Residue number

HLA Allele

Peptide sequence

Protein identifier

NetMHCpan prediction score

NetMHCstab prediction score

T-cell propensity score

NetTepi combined prediction score

%Rank of prediction score to a set of 100.000 random natural 9mer peptides

EXAMPLE OUTPUT


# NetTepi version 1.0

# Input is in FASTA format

# Peptide lengths: 9

----------------------------------------------------------------------------------------------------
 Pos       Allele      Peptide          Identity      Aff     Stab    Tcell     Comb   %Rank
----------------------------------------------------------------------------------------------------
   0   HLA-A02:01    ASQKRPSQR   seq2_optional_c    0.020    0.005   -0.422   -0.027   50.00       
   1   HLA-A02:01    SQKRPSQRH   seq2_optional_c    0.019    0.006   -0.252   -0.010   50.00       
   2   HLA-A02:01    QKRPSQRHG   seq2_optional_c    0.013    0.005   -0.202   -0.010   50.00       
   3   HLA-A02:01    KRPSQRHGS   seq2_optional_c    0.021    0.007   -0.187   -0.002   50.00       
   4   HLA-A02:01    RPSQRHGSK   seq2_optional_c    0.018    0.004   -0.157   -0.002   50.00