Output format



DESCRIPTION

The prediction output consists of 6 columns.

  • Residue number
  • Kinase
  • Peptide sequence
  • Protein identifier
  • Prediction score
  • Flag - YES/NO desition, only available for kinases in training set



  • OUTPUT EXAMPLE

    
    
    
    # NetPhospan version 1.0
    
    # Tmpdir made /scratch/netPhospanq4riRd
    # Input is in FSA format
    
    # Peptide length 21
    
    -----------------------------------------------------------------------------------------------------
     pos          kin         peptide               Identity      Pred     Flag
    -----------------------------------------------------------------------------------------------------
        0        PKACA GEIYDALDMLTRENVALKVES           TTBK2      0.028      0
        0        PKACA TRENVALKVESAQQPKQVLKM           TTBK2      0.192      0
        0        PKACA QGRNLADLRRSQSRGTFTIST           TTBK2      0.755      1
        0        PKACA RNLADLRRSQSRGTFTISTTL           TTBK2      0.847      1
        0        PKACA ADLRRSQSRGTFTISTTLRLG           TTBK2      0.602      1
        0        PKACA LRRSQSRGTFTISTTLRLGRQ           TTBK2      0.306      0
        0        PKACA RSQSRGTFTISTTLRLGRQIL           TTBK2      0.305      0
    -----------------------------------------------------------------------------------------------------
    
    Protein TTBK2. Kinase PKACA. Number of peptides 24
    
    -----------------------------------------------------------------------------------------------------