Output format


DESCRIPTION

The prediction output consists of 6 columns.

  • Residue number
  • Kinase
  • Peptide sequence
  • Protein identifier
  • Prediction score
  • Flag - YES/NO desition, only available for kinases in training set



    • OUTPUT EXAMPLE

    

    
# NetPhospan version 1.0

# Tmpdir made /scratch/netPhospanq4riRd
# Input is in FSA format

# Peptide length 21

-----------------------------------------------------------------------------------------------------
 pos          kin         peptide               Identity      Pred     Flag
-----------------------------------------------------------------------------------------------------
    0        PKACA GEIYDALDMLTRENVALKVES           TTBK2      0.028      0
    0        PKACA TRENVALKVESAQQPKQVLKM           TTBK2      0.192      0
    0        PKACA QGRNLADLRRSQSRGTFTIST           TTBK2      0.755      1
    0        PKACA RNLADLRRSQSRGTFTISTTL           TTBK2      0.847      1
    0        PKACA ADLRRSQSRGTFTISTTLRLG           TTBK2      0.602      1
    0        PKACA LRRSQSRGTFTISTTLRLGRQ           TTBK2      0.306      0
    0        PKACA RSQSRGTFTISTTLRLGRQIL           TTBK2      0.305      0
-----------------------------------------------------------------------------------------------------

Protein TTBK2. Kinase PKACA. Number of peptides 24

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