# NetMHCpan version 4.1 # Tmpdir made /usr/opt/www/webface/tmp/server/netmhcpan/5E4EEA2C000053D26D7D1DEF/netMHCpanYdWfgb # Input is in FSA format # Peptide length 8,9,10,11,12 # Make Eluted ligand likelihood predictions HLA-A03:01 : Distance to training data 0.000 (using nearest neighbor HLA-A03:01) # Rank Threshold for Strong binding peptides 0.500 # Rank Threshold for Weak binding peptides 2.000 ------------------------------------------------------------------------------------------------------------ Pos HLA Peptide Core Of Gp Gl Ip Il Icore Identity Score_EL Rnk_EL BindLevel ------------------------------------------------------------------------------------------------------------ 15 HLA-A*03:01 HQAAMQMLK HQAAMQMLK 0 0 0 0 0 HQAAMQMLK Gag_180_209 0.6594640 0.259 <= SB 14 HLA-A*03:01 GHQAAMQMLK GQAAMQMLK 0 1 1 0 0 GHQAAMQMLK Gag_180_209 0.2451190 1.084 <= WB 13 HLA-A*03:01 GGHQAAMQMLK GQAAMQMLK 0 1 2 0 0 GGHQAAMQMLK Gag_180_209 0.1045310 1.977 <= WB 12 HLA-A*03:01 VGGHQAAMQMLK VQAAMQMLK 0 1 3 0 0 VGGHQAAMQMLK Gag_180_209 0.0245250 4.089 7 HLA-A*03:01 TMLNTVGGH TMLNTVGGH 0 0 0 0 0 TMLNTVGGH Gag_180_209 0.0194210 4.545 15 HLA-A*03:01 HQAAMQMLKE HQAAMQMLK 0 0 0 0 0 HQAAMQMLK Gag_180_209 0.0083750 6.588 16 HLA-A*03:01 QAAMQMLK QAA-MQMLK 0 0 0 3 1 QAAMQMLK Gag_180_209 0.0042090 8.777 8 HLA-A*03:01 MLNTVGGHQ MLNTVGGHQ 0 0 0 0 0 MLNTVGGHQ Gag_180_209 0.0029890 10.119 21 HLA-A*03:01 MLKETINEE MLKETINEE 0 0 0 0 0 MLKETINEE Gag_180_209 0.0015830 13.034 11 HLA-A*03:01 TVGGHQAAM TVGGHQAAM 0 0 0 0 0 TVGGHQAAM Gag_180_209 0.0013180 14.043
The prediction output for each molecule consists of the following columns:
Three amino acid sequences are reported for each row of predictions:
The Peptide is the complete amino acid sequence evaluated by NetMHCpan. Peptides are the
full sequences submitted as a peptide list, or the result of digestion of source proteins (Fasta submission)
The iCore is a substring of Peptide, encompassing
all residues between P1 and P-omega of the MHC. For all intents and purposes, this is the minimal candidate
ligand/epitope that should be considered for further validation.
The Core is always 9 amino acids long,
and is a construction used for sequence aligment and identification of binding anchors.