SUBMISSION

Hover the mouse cursor over the symbol for a short description of the options

INPUT TYPE:

Paste a single sequence or several sequences in FASTA format into the field below:

... or upload a file in FASTA format directly from your local disk:

... or load some sample data:



PEPTIDE LENGTH:  

You may select multiple lengths


SELECT SPECIES/LOCI:



Select Allele(s) (max 20 per submission)


... or type Allele names (i.e. HLA-A01:01) separated by commas and without spaces (max 20 per submission): 

For a list of allowed allele names click here

... or paste a single full length MHC protein sequence in FASTA format into the field below:

... or load a file containing a full length MHC protein sequence in FASTA format directly from your local disk:



ADDITIONAL CONFIGURATION:

Threshold for strong binder: % Rank 

Threshold for weak binder: % Rank 

Filtering threshold for %Rank (leave -99 to print all) 

Include BA predictions  

Sort by prediction score 

Save predictions to XLS file 





Restrictions:
At most 500 sequences per submission; each sequence not more than 20,000 amino acids and not less than 8 amino acids. Max 20 MHC alleles per submission.

Confidentiality:
The sequences are kept confidential and will be deleted after processing.


CITATIONS

For publication of results, please cite:


DATA RESOURCES

Data resources used to develop this server was obtained from


PORTABLE VERSION

Would you prefer to run NetMHCpan at your own site? NetMHCpan v. 4.1 is available as a stand-alone software package, with the same functionality as the service above. Ready-to-ship packages exist for the most common UNIX platforms. There is a download tap for academic users; other users are requested to contact CBS Software Package Manager at health-software@dtu.dk.