The output provides common information for all the alleles:
For each allele the allele name is given and if NetMHCcons method was chosen, it is specified which method or combination of methods was used to get predictions for that allele.
The prediction output for each allele consists of 8 columns:
Fianlly, at the end of predictions for each allele, the numbers of total strong and weak binders are given.
# Method: NetMHCcons # Input is in FASTA format # Peptide length 9 # Threshold for Strong binding peptides (IC50) 50.000 nM # Threshold for Weak binding peptides (IC50) 500.000 nM # Threshold for Strong binding peptides (%Rank) 0.5% # Threshold for Weak binding peptides (%Rank) 2% # Allele: HLA-A01:01 # NetMHCcons = NetMHC+NetMHCpan --------------------------------------------------------------------------------------- pos Allele peptide Identity 1-log50k(aff) Affinity(nM) %Rank BindingLevel --------------------------------------------------------------------------------------- 0 HLA-A*01:01 ASTPGHTII seq1 0.092 18478.42 15.00 1 HLA-A*01:01 STPGHTIIY seq1 0.358 1044.93 0.80 <=WB 2 HLA-A*01:01 TPGHTIIYE seq1 0.038 32965.50 50.00 3 HLA-A*01:01 PGHTIIYEA seq1 0.044 30893.41 50.00 4 HLA-A*01:01 GHTIIYEAV seq1 0.057 27131.77 50.00 5 HLA-A*01:01 HTIIYEAVC seq1 0.062 25564.30 32.00 6 HLA-A*01:01 TIIYEAVCL seq1 0.057 27131.77 50.00 7 HLA-A*01:01 IIYEAVCLH seq1 0.069 23571.74 32.00 8 HLA-A*01:01 IYEAVCLHN seq1 0.046 30396.07 50.00 9 HLA-A*01:01 YEAVCLHND seq1 0.037 33686.63 50.00 10 HLA-A*01:01 EAVCLHNDR seq1 0.046 30232.07 50.00 11 HLA-A*01:01 AVCLHNDRT seq1 0.050 29266.51 50.00 12 HLA-A*01:01 VCLHNDRTT seq1 0.036 34053.09 50.00 13 HLA-A*01:01 CLHNDRTTI seq1 0.061 25842.40 32.00 14 HLA-A*01:01 LHNDRTTIP seq1 0.039 32787.64 50.00 ---------------------------------------------------------------------------------------- Number of strong binders: 0 Number of weak binders: 1 ----------------------------------------------------------------------------------------