NetMHCIIpan 4.0 Server

SUBMISSION

Hover the mouse cursor over the symbol for a short description of the options

INPUT TYPE:

Paste a single sequence or several sequences in FASTA format into the field below:

... or upload a file in FASTA format directly from your local disk:

... or load some sample data:

PEPTIDE LENGTH (specify variable length as a comma separated list):  

Use context encoding



SELECT SPECIES/LOCI:



Select Allele(s) (max. 20 per submission)



... or type a list of molecules names separated by commas without spaces (max 20 per submission)

For the list of available molecule names click here

Alternatively, upload full length Alpha and Beta chain protein sequences:


ADDITIONAL CONFIGURATION:

Threshold for strong binder (% Rank)  

Threshold for weak binder (% Rank)  

Include BA predictions

Turn on filtering options 

Print only the strongest binding core 

Sort output by prediction score 

Save predictions to xls file 

Restrictions:
At most 5000 sequences per submission; each sequence not more than 20,000 amino acids and not less than 8 amino acids. Max 20 MHC alleles per submission.

Confidentiality:
The sequences are kept confidential and will be deleted after processing.

CITATIONS

For publication of results, please cite:

DATA RESOURCES

Benchmark data used to develop this server were obtained from:

PORTABLE VERSION

NetMHCIIpan 4.0 is available as a stand-alone software package, with the same functionality as the service above. Ready-to-ship packages exist for Linux and MacOSX. There is the tap "download" for academic users; other users are requested to contact CBS Software Package Manager at health-software@dtu.dk.