The NetGPI dataset

The datasets for training and benchmarking NetGPI-1.1 can be found here. The dataset is provided in 2-line FASTA format.

The format is as follows:

>uniprot_ac|kingdom|anchoring|pos_from_end|pos_from_beginning|part_no|anchor_exp|omega_exp
amino-acid sequence

where:

• uniprot_ac is an accession number
• kingdom is the organism's kingdom
• anchoring is GPI-anchored or non_GPI-anchored
• pos_from_end is the position within the sequence from the end, where 0 is the sentinel
• pos_from_beginning is the position within the truncated sequence from the beginning
• part_no is the partition that the protein is assigned to
• anchor_exp is 1 when the entry has experimental evidence for the GPI-anchoring signal sequence, 0 otherwise
• omega_exp is 1 when the entry has experimental evidence for the omega-site, 0 otherwise

NetGPI dataset: download