Output format


DESCRIPTION

The output with graphics enabled consist of three parts.

The first part is an output in HOW format which contains on the first line the number of residues and the sequence name. Then follows the amino acid sequence and below is a representation of each amino acid with the corresponding prediction ('C' for cleavage site and '.' for nothing).

The second part is a listing of the examined residues (glutamines), their score, and in case the score exceeds the 0.5 threshold the amino acids around the cleavage site.

The third part is a graphical representation of the table in the second part of the output.

Multiple sequences are separated with '//'.




EXAMPLE OUTPUT




   703 AT6B_HUMAN 

MAELMLLSEIADPTRFFTDNLLSPEDWGLQNSTLYSGLDEVAEEQTQLFRCPEQDVPFDGSSLDVGMDVSPSEPPWELLP      80

IFPDLQVKSEPSSPCSSSSLSSESSRLSTEPSSEALGVGEVLHVKTESLAPPLCLLGDDPTSSFETVQINVIPTSDDSSD     160

VQTKIEPVSPCSSVNSEASLLSADSSSQAFIGEEVLEVKTESLSPSGCLLWDVPAPSLGAVQISMGPSLDGSSGKALPTR     240

KPPLQPKPVVLTTVPMPSRAVPPSTTVLLQSLVQPPPVSPVVLIQGAIRVQPEGPAPSLPRPERKSIVPAPMPGNSCPPE     320

VDAKLLKRQQRMIKNRESACQSRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSELKLGSGNRKVVCI     400

MVFLLFIAFNFGPVSISEPPSAPISPRMNKGEPQPRRHLLGFSEQEPVQGVEPLQGSSQGPKEPQPSPTDQPSFSNLTAF     480

PGGAKELLLRDLDQLFLSSDCRHFNRTESLRLADELSGWVQRHQRGRRKIPQRAQERQKSQPRKKSPPVKAVPIQPPGPP     560

ERDSVGQLQLYRHPDRSQPAFLDAIDRREDTFYVVSFRRDHLLLPAISHNKTSRPKMSLVMPAMAPNETLSGRGAPGDYE     640

EMMQIECEVMDTRVIHIKTSTVPPSLRKQPSPTPGNATGGPLPVSAASQAHQASHQPLYLNHP

................................................................................      80

................................................................................     160

................................................................................     240

................................................................................     320

.....................................C..........................................     400

................................................................................     480

................................................................................     560

................................................................................     640

...............................................................

 

Pos     Score   Cleavage

___________________________

30      0.251   none

45      0.067   none

47      0.063   none

54      0.067   none

86      0.235   none

148     0.069   none

162     0.153   none

188     0.169   none

222     0.063   none

245     0.462   none

270     0.393   none

274     0.075   none

285     0.108   none

291     0.102   none

329     0.065   none

330     0.066   none

341     0.281   none

351     0.333   none

358     0.916   EARLQ^AVLAD

365     0.067   none

366     0.062   none

434     0.066   none

445     0.061   none

449     0.100   none

455     0.196   none

459     0.064   none

465     0.064   none

471     0.125   none

494     0.068   none

521     0.073   none

524     0.080   none

532     0.071   none

535     0.071   none

538     0.063   none

541     0.082   none

555     0.073   none

567     0.083   none

569     0.085   none

578     0.071   none

644     0.076   none

669     0.072   none

689     0.150   none

692     0.097   none

696     0.079   none

___________________________







//