Output format

Description

The output consists of 16 columns:

Residue number.

Protien identifier

pep

Peptide sequence

aff

Predicted MHC binding affinity. The value is give as 1 - log50k(aff), where log50k is the logaritm with base 50.000, and aff is the affinity in nM units

aff_rescale

Rescale binding affinity. The predicted binding affinity is normalized by the 1st percentile score

cle

C terminal cleavage affinity

tap

TAP transport efficiency

COMB

Prediction score

<-E. Identified MHC ligands

EXAMPLE OUTPUT

NetCTL predictions using MHC supertype A24. Threshold 0.500000 ....... 17 ID 143B_BOVIN pep AERYDDMAA aff 0.0349 aff_rescale 0.0478 cle 0.0344 tap -0.5270 COMB 0.0249 18 ID 143B_BOVIN pep ERYDDMAAA aff 0.0348 aff_rescale 0.0476 cle 0.4333 tap -0.1920 COMB 0.0813 19 ID 143B_BOVIN pep RYDDMAAAM aff 0.3017 aff_rescale 0.4128 cle 0.9943 tap 0.4700 COMB 0.5357 <-E 20 ID 143B_BOVIN pep YDDMAAAMK aff 0.0352 aff_rescale 0.0482 cle 0.9622 tap 0.0930 COMB 0.1491 21 ID 143B_BOVIN pep DDMAAAMKA aff 0.0343 aff_rescale 0.0469 cle 0.6469 tap -1.1460 COMB 0.0543 ...... ---------------------------- Number of MHC ligands 8 identified. Number of amino acids 237. Protein name 143B_BOVIN ----------------------------