Submit a VCF file (example of a VCF):
Please ensure your VCF file has been filtered to remove non-somatic variants!

Submit an expression file - optional (example of an expression file):
Select whether expression data is quantified at the level of genes or transcripts:

Select HLA locus

Select allele (max 6 per submission) or type allele names (e.g. HLA-A01:01) separated by commas (and no spaces). Max 6 alleles per submission)

For a list of allowed allele names click here List of MHC allele names.

Select peptide length (multiple lengths are possible):

Output FASTA file with long peptides - mutation in the middle 

Submit HG19-aligned VCF file (liftover to GRCh38 will be performed) 

Max 6 MHC alleles per submission.

The files are kept confidential and will be deleted after processing.


For publication of results, please cite:

MuPeXI relies on binding predictions from NetMHCpan; for publication of results please cite NetMHCpan in addition to MuPeXI.


MuPeXI is available on GitHub.