For publication of results, please cite:
MaxAlign: maximizing usable data in an alignment
BMC Bioinformatics 2007, 8:312
Gouveia-Oliveira R, Sackett P W, Pedersen A G
Would you prefer to run MaxAlign at your own machine?
MaxAlign 1.1 is available for download. Right-click - Save as.
You need a perl installation to run MaxAlign, but nothing else as the program is made in pure perl and requires no extra modules.