Data formats

This page is an individual page for the data format, and can also be found as a section on the introduction page. The data formats used by the programs, Inform, pdb2mp, and MatrixPlot are described and illustrated by examples.

• Inform formats:
  The formats for Inform are those that can be used for the MatrixPlot pages for generating mutual information plots of nucletide sequences and proteins. The formats are a simple align format, fasta format and the msf format. Examples:
  • Nucleotide sequences
    align fasta msf
  • Proteins
    align fasta msf
• pdb2mp formats
  • PDB format
    See example in the Brookhaven Protein Data Bank
  • Simple column format
    col format
• MatrixPlot format
  • mp format