DTU Health Tech

Department of Health Technology

Research
Education
Collaboration
Services and Products
News
About

SHARE ON

MHCMotifDecon - 1.2

Motif deconvolution of Multi-allele immunopetidomics data

MHCMotifDecon-1.2 is a supervised method for motif deconvolution of MHC peptidome data. The method uses MHC binding predictions from NetMHCpan-4.1 (for MHC class I) and NetMHCIIpan-4.3 (for MHC class II) to deconvolute and assign likely MHC restriction elements to MHC peptidome data.

In the deconvolution, MS co-immunoprecipitated contaminants are identified and placed in a trash bin.

SUBMISSION

Hover the mouse cursor over the symbol for a short description of the options

INPUT TYPE:

Paste an input into the field below:

... or upload a file in format "Ligand [Cell_line_ID]" directly from your local disk:

... or load some sample data (currently only available for class II):

If input data is for multiple cell lines:

paste an input into the field below:


... or load a file with the allele information for each cell line in the format [Cell_line_ID HLA1,HLA2,...] directly from your local disk:


else if input data is for a single cell line:

select species/loci:



Select Allele(s)