Output format



DESCRIPTION

The prediction output consists of 3 columns (Ignoring the first).

  • Sequence
  • MAIT_hit sequence
  • Score of best MAIT hit The score is calculated by scoring matching the query sequence against the database of MAIT sequences and reporting the best scoring match. Match scores fall between 0 and 1, where 1 is the score for a perfect match.

  • EXAMPLE OUTPUT

    
    
    # Read 21 elements on linelist /home/projects/mniel/MAIT_Match/data/blosum62.qij
    # Number of PEP entries read 10 from file /usr/opt/www/webface/tmp/server/mait_match/5543C1FC0000566C77B8007C/file.0
    # Number of PEP entries read 187 from file /home/projects/mniel/MAIT_Match/data/MAIT_DB_update
    Res              Sequence             MAIT_hit  Score
    Best    CAMRESISSGSARQLTF         CAPSGSARQLTF 0.8331
    Best      CAANVGGGSNYKLTF      CAVPNSGGSNYKLTF 0.8718
    Best        CAGGDNYGQNFVF        CAVQGNYGQNFVF 0.8706
    Best    CAMRESISSGSARQLTF         CAPSGSARQLTF 0.8331
    Best     CALGELWDQAGTALIF        CAVLGQAGTALIF 0.8161
    Best        CAMSEGGYNKLIF         CAVGSGGYNKLI 0.8884
    Best      CAGAPRDNYGQNFVF       CAVEEDNYGQNFVF 0.8308
    Best        CAVEPGGYQKVTF         CVAYSGGYQKVT 0.8595
    Best    CACDPLGGGDTTDKLIF         CAVGEDTGKLIF 0.7544
    Best         CAVNPNDYKLSF         CAVLSNDYKLSF 0.9019