#Call: /usr/cbs/bio/src/gibbscluster-2.0/GibbsCluster-2.0a_WEB.pl -H /tools/bin/R-3.1.2 -G /usr/cbs/bio/src/seq2logo-2.0/Seq2Logo.py -k 5 -Z 5000 -f /usr/opt/www/webface/tmp/server/GibbsCluster/58481AA800004EB5D1676227/file.1 -C -g 1-3 -l 9 -t 0.8 -i 100 -n 20 -D 5 -I 1 -s 100 -r 20 -u 10 -T -j 0 -b 0.8 -q 10 -S 3 -P gibbs -c 0 -z 1 #Wed Dec 7 15:20:26 2016 #Session ID: 27911 #Run name: gibbs_27911 #Read 200 unique sequences ##### Settings: ##### #No shift moves, cluster move at every iteration #Number of clusters: 1 - 3 #Motif length: 9 #Initial MC temperture: 0.8 #Number of temperature steps: 20 #Number of iterations x Sequence x Tstep: 100 #Max insertion length: 1 #Max deletion length: 5 #Interval between Indel moves: 10 #Number of initial seeds: 3 #Penalty lambda: 0.8 #Weight on small clusters: 10 #Sequence weighting type: 0 #Use trash cluster to remove outliers: 1 #Threshold for trash cluster: 0 #### Running Gibbs clustering... #Clustering with 1 groups, seed number 1 #Clustering with 1 groups, seed number 2 #Clustering with 1 groups, seed number 3 #Clustering with 2 groups, seed number 1 #Clustering with 2 groups, seed number 2 #Clustering with 2 groups, seed number 3 #Clustering with 3 groups, seed number 1 #Clustering with 3 groups, seed number 2 #Clustering with 3 groups, seed number 3 #Clustering complete! ### Determining seeds with highest KLD... #Best 1 groups, seed 3 #Best 2 groups, seed 1 #Best 3 groups, seed 2 ###Parsing result files... #RESULTS for 1 CLUSTERS #1 Final Average KLD: 9.466122 #1 1 197 9.466 #Outliers: 3 # #RESULTS for 2 CLUSTERS #2 Final Average KLD: 10.917174 #2 1 100 9.372 #2 2 100 12.462 #Outliers: 0 # #RESULTS for 3 CLUSTERS #3 Final Average KLD: 10.907671 #3 1 101 12.348 #3 2 99 9.438 #3 3 0 0.000 #Outliers: 0 #