Submission

DATA SUBMISSION

Paste peptides in the box:

or submit a file directly from your local disk:



To load some SAMPLE DATA click here:

More sample data: Sample 1 - Sample 2 - Fibroblast (Bassani, MCP 2016)

SUBMIT job



Optionally set some of the parameters before starting your job, or load one of the recommended configurations:

MHC class I ligands of same length:
MHC class I ligands of length 8-13:
MHC class II ligands:

BASIC options

Hover the mouse cursor over the symbol for a short description of the options

Job name

Number of clusters

Motif length

ADVANCED options

Make clustering moves at each iteration

Max deletion length

Max insertion length

Number of seeds for initial conditions

Penalty factor for inter-cluster similarity (λ)

Weigth on small clusters (σ)

Use trash cluster to remove outliers

VERY ADVANCED options

Number of iterations per sequence per temperature step

Initial Monte Carlo temperature

Number of temperature steps

Interval between Indel moves

Interval between Single Peptide moves

Interval between Phase Shift moves

Background amino acid frequencies

Preference for hydrophobic AAs at P1

Sequence weighting type


SUBMIT job



Confidentiality:
The sequences are kept confidential and will be deleted after processing.

CITATIONS