# /tools/src/easygibbs-1.0/bin/Linux.x86_64/gibbss_mc -blf /tools/src/easygibbs-1.0/data/blosum62.freq_rownorm -swt 0 -wlc 50 -l 9 -m para.dat -a ali.dat -ts 0.15 -te 0.0001 -nt 10 -s -1 -i 20 -bg 1 mtfile.fasta 

Last position-specific scoring matrix computed       
            A       R       N       D       C       Q       E       G       H       I       L       K       M       F       P       S       T       W       Y       V 
  1 A  -2.149  -2.147  -2.510  -2.611  -1.182  -2.027  -2.209  -3.750  -0.490  -0.022   0.505  -2.022  -0.051   3.945  -3.792  -2.084  -1.980   5.030   4.856  -0.322 
  2 A  -0.113   1.031  -1.493   0.217  -0.932  -0.591  -1.228  -0.820   0.276  -0.091   0.627   0.029   0.343  -0.148  -1.415  -0.436  -0.494   1.910  -0.124   1.236 
  3 A   0.625   0.658  -0.529  -1.639  -1.355   1.018   0.513  -0.087  -0.955  -0.708   0.017   1.158  -0.193  -1.075   0.083   0.665  -0.195  -0.484  -0.124  -0.600 
  4 A   0.249  -1.382   0.141   0.536  -2.827   2.250   1.507  -1.292  -0.173  -0.031  -0.903  -0.938   1.175   0.142  -1.534   0.320  -0.263   2.015  -0.822   0.138 
  5 A   0.260  -0.395   2.400   0.176  -0.123  -0.104  -0.116   0.037   0.123  -0.536  -0.905  -0.472   0.110  -0.370   0.174   0.632  -0.570   1.211  -0.790  -0.639 
  6 A   0.303  -0.056   0.410   0.380  -0.583   0.751  -0.778  -0.576  -0.337  -0.884  -1.619  -0.645  -0.783  -2.063  -0.653   1.216   3.020  -3.166  -1.083   0.239 
  7 A   0.350  -0.620  -0.473   0.365  -1.101  -0.400  -0.260  -1.872   1.586  -0.897   0.639  -0.929  -0.059  -0.643   2.380   0.046   0.974  -0.577  -0.137  -0.651 
  8 A   0.636  -0.037  -1.008  -0.958   1.176   0.244  -0.559  -1.057  -0.881  -1.208   0.383   1.073  -0.195  -0.906   2.986  -0.103  -0.531   1.206  -1.089  -1.217 
  9 A   1.580  -0.015  -0.560  -0.323  -0.710   1.658  -0.763   1.956  -0.651  -1.121  -0.458  -0.659  -0.717  -1.009  -1.495   0.770  -0.651  -3.001  -0.902  -1.019