Advanced options
Motif parameters
Motif length (min 1, max 51).
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Matrix parameters
Clustering method.
Henikoff & Henikoff 1/nr method
Cluster at 62% identity
No clustering
Weight on prior.
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General parameters
Sorting of output
Sort output on predicted values
Don't sort output
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Sampling parameters
Start temperature
End temperature
Number of temperature steps (default 10, max 1000)
Random seed (-1: default, 0: seed on time, \>0: choose seed)
Number of iterations per training example (default 20, max 1000)
Background model
Flat (all amino acids have probability0.05)
Swissprot
From training data
Cutoff for counting an example as a positive example.
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Position specific weighting
Weights on the different positions (format example: "1,3,1,1,1,1,1,1,3". Leave blank to choose default: equal weight on all positions)
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Load saved prediction method
Paste in parameters,
or upload parameter file
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