Output

The output conforms to the GFF format. For each input sequence the server prints a list of predicted genes, one per line. The columns are:

seqname: input sequence name;
model: organism model code (also in plain text in the table head);
feature: predicted feature, 'CDS' or 'CDSsub' (alternative translation start);
start and end: positions in the sequence;
score: R-value, indicating how likely the fragment is to be just a non-coding open reading frame rather than a real gene;
strand: '+' or '-';
startc: predicted start codon;
odds: log odds score.

Only the predictions with R-values lower than the selected R-value cutoff (the default is 2) are reported.

The example below shows the EasyGene 1.2 output for the sequence taken from the GenBank entry AB010576, containing Bacillus subtilis ComX, ComQ and DegQ genes. All the three genes are predicted as annotated in the database (shown in green), with high confidence, although an alternative translation start is preferred for comQ (shown in orange). Two additional genes not annotated in the GenBank entry are also predicted.

Output format

DESCRIPTION

EXAMPLE OUTPUT