TreeHugger is a simple tool for constructing NJ trees from DNA and Protein alignments. |
Confidentiality:
The sequences are kept confidential and will be deleted
after processing.
For publication of results, please cite:
Rasmus Wernersson & Anders Gorm Pedersen
TreeHugger - your friendly local neighborhood tree builder.
(in preparation)
Paste in a DNA or Protein multiple alignment in FASTA, ALN or MSF format, and hit "Submit query". TreeHugger will then autodetect file format and whether the sequences are DNA or Protein, and construct a phylogenetic tree using the NJ algorithm.
The results are shown in the standard Newick/PHYLIP format for further visualization in a tree viewer — e.g. FigTree.
>Sheep ATGGCCCTGTGGACACGCCTGGTGCCCCTGCTGGCCCTGCTGGCACTCTG GGCCCCCGCCCCGGCCCACGCCTTCGTCAACCAGCACCTGTGCGGCTCCC ACCTGGTGGAGGCGCTGTACCTGGTGTGCGGAGAGCGCGGCTTCTTCTAC ACGCCCAAGGCCCGCCGGGAGGTGGAGGGCCCCCAGGTGGGGGCGCTGGA GCTGGCCGGAGGCCCC------GGC---------GCGGGTGGCCTGGAGG GGCCCCCGCAGAAGCGTGGCATCGTGGAGCAGTGCTGCGCCGGCGTCTGC TCTCTCTACCAGCTGGAGAACTACTGTAAC >OwlMonkey ATGGCCCTGTGGATGCACCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTG GGGACCCGAGCCAGCCCCGGCCTTTGTGAACCAGCACCTGTGCGGCCCCC ACCTGGTGGAAGCCCTCTACCTGGTGTGCGGGGAGCGAGGTTTCTTCTAC GCACCCAAGACCCGCCGGGAGGCGGAGGACCTGCAGGTGGGGCAGGTGGA GCTGGGTGGGGGCTCTATCACGGGCAGCCTGCCACCC------TTGGAGG GTCCCATGCAGAAGCGTGGCGTCGTGGATCAGTGCTGCACCAGCATCTGC TCCCTCTACCAGCTGCAGAACTACTGCAAC >Chimp ATGGCCCTGTGGATGCGCCTCCTGCCCCTGCTGGTGCTGCTGGCCCTCTG GGGACCTGACCCAGCCTCGGCCTTTGTGAACCAACACCTGTGCGGCTCCC ACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCTTCTAC ACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTGGGGCAGGTGGA GCTGGGCGGGGGCCCTGGTGCAGGCAGCCTGCAGCCCTTGGCCCTGGAGG GGTCCCTGCAGAAGCGTGGTATCGTGGAACAATGCTGTACCAGCATCTGC TCCCTCTACCAGCTGGAGAACTACTGCAAC >Dog ATGGCCCTCTGGATGCGCCTCCTGCCCCTGCTGGCCCTGCTGGCCCTCTG GGCGCCCGCGCCCACCCGAGCCTTCGTTAACCAGCACCTGTGTGGCTCCC ACCTGGTAGAGGCTCTGTACCTGGTGTGCGGGGAGCGCGGCTTCTTCTAC ACGCCTAAGGCCCGCAGGGAGGTGGAGGACCTGCAGGTGAGGGACGTGGA GCTGGCCGGGGCGCCTGGCGAGGGCGGCCTGCAGCCCCTGGCCCTGGAGG GGGCCCTGCAGAAGCGAGGCATCGTGGAGCAGTGCTGCACCAGCATCTGC TCCCTCTACCAGCTGGAGAATTACTGCAAC >Pig ATGGCCCTGTGGACGCGCCTCCTGCCCCTGCTGGCCCTGCTGGCCCTCTG GGCGCCCGCCCCGGCCCAGGCCTTCGTGAACCAGCACCTGTGCGGCTCCC ACCTGGTGGAGGCGCTGTACCTGGTGTGCGGGGAGCGCGGCTTCTTCTAC ACGCCCAAGGCCCGTCGGGAGGCGGAGAACCCTCAGGCAGGTGCCGTGGA GCTGGGCGGAGGCCTG------GGCGGCCTGCAGGCCCTGGCGCTGGAGG GGCCCCCGCAGAAGCGTGGCATCGTGGAGCAGTGCTGCACCAGCATCTGT TCCCTCTACCAGCTGGAGAACTACTGCAAC >GuineaPig ATGGCTCTGTGGATGCATCTCCTCACCGTGCTGGCCCTGCTGGCCCTCTG GGGGCCCAACACTAATCAGGCCTTTGTCAGCCGGCATCTGTGCGGCTCCA ACTTAGTGGAGACATTGTATTCAGTGTGTCAGGATGATGGCTTCTTCTAT ATACCCAAGGACCGTCGGGAGCTAGAGGACCCACAGGTGGAGCAGACAGA ACTGGGCATGGGCCTGGGGGCAGGTGGACTACAGCCCTTGGCACTGGAGA TGGCACTACAGAAGCGTGGCATTGTGGATCAGTGCTGTACTGGCACCTGC ACACGCCACCAGCTGCAGAGCTACTGCAAC >GreenMonkey ATGGCCCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTG GGGACCTGACCCGGTCCCGGCCTTTGTGAACCAGCACCTGTGCGGCTCCC ACCTGGTGGAAGCCCTCTACCTGGTGTGCGGGGAGCGAGGCTTCTTCTAC ACGCCCAAGACCCGCCGGGAGGCAGAGGACCCGCAGGTGGGGCAGGTAGA GCTGGGCGGGGGCCCTGGCGCAGGCAGCCTGCAGCCCTTGGCGCTGGAGG GGTCCCTGCAGAAGCGCGGCATCGTGGAGCAGTGCTGTACCAGCATCTGC TCCCTCTACCAGCTGGAGAACTACTGCAAC >Human ATGGCCCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTG GGGACCTGACCCAGCCGCAGCCTTTGTGAACCAACACCTGTGCGGCTCAC ACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCTTCTAC ACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTGGGGCAGGTGGA GCTGGGCGGGGGCCCTGGTGCAGGCAGCCTGCAGCCCTTGGCCCTGGAGG GGTCCCTGCAGAAGCGTGGCATTGTGGAACAATGCTGTACCAGCATCTGC TCCCTCTACCAGCTGGAGAACTACTGCAAC >Chicken ATGGCTCTCTGGATCCGATCACTGCCTCTTCTGGCTCTCCTTGTCTTTTC TGGCCCTGGAACCAGCTATGCAGCTGCCAACCAGCACCTCTGTGGCTCCC ACTTGGTGGAGGCTCTCTACCTGGTGTGTGGAGAGCGTGGCTTCTTCTAC TCCCCCAAAGCCCGACGGGATGTCGAGCAGCCCCTAGTGAGCAGTCCCTT GCGTGGCGAGGCA---------GGAGTGCTGCCTTTCCAGCAGGAGGAAT ACGAGAAAGTCAAGCGAGGGATTGTTGAGCAATGCTGCCATAACACGTGT TCCCTCTACCAACTGGAGAACTACTGCAAC >Mouse ATGGCCCTGTTGGTGCACTTCCTACCCCTGCTGGCCCTGCTTGCCCTCTG GGAGCCCAAACCCACCCAGGCTTTTGTCAAACAGCATCTTTGTGGTCCCC ACCTGGTAGAGGCTCTCTACCTGGTGTGTGGGGAGCGTGGCTTCTTCTAC ACACCCAAGTCCCGCCGTGAAGTGGAGGACCCACAAGTGGAACAACTGGA GCTGGGAGGAAGCCCC------GGGGACCTTCAGACCTTGGCGTTGGAGG TGGCCCGGCAGAAGCGTGGCATTGTGGATCAGTGCTGCACCAGCATCTGC TCCCTCTACCAGCTGGAGAACTACTGCAAC
CLUSTAL - multiple sequence alignment - created by revtrans Sheep MALWTRLVPLLALLALWAPAPAHAFVNQHLCGSHLVEALYLVCGERGFFYTPKARREVEG OwlMonkey MALWMHLLPLLALLALWGPEPAPAFVNQHLCGPHLVEALYLVCGERGFFYAPKTRREAED Chimp MALWMRLLPLLVLLALWGPDPASAFVNQHLCGSHLVEALYLVCGERGFFYTPKTRREAED Dog MALWMRLLPLLALLALWAPAPTRAFVNQHLCGSHLVEALYLVCGERGFFYTPKARREVED Pig MALWTRLLPLLALLALWAPAPAQAFVNQHLCGSHLVEALYLVCGERGFFYTPKARREAEN GuineaPig MALWMHLLTVLALLALWGPNTNQAFVSRHLCGSNLVETLYSVCQDDGFFYIPKDRRELED GreenMonkey MALWMRLLPLLALLALWGPDPVPAFVNQHLCGSHLVEALYLVCGERGFFYTPKTRREAED Human MALWMRLLPLLALLALWGPDPAAAFVNQHLCGSHLVEALYLVCGERGFFYTPKTRREAED Chicken MALWIRSLPLLALLVFSGPGTSYAAANQHLCGSHLVEALYLVCGERGFFYSPKARRDVEQ Mouse MALLVHFLPLLALLALWEPKPTQAFVKQHLCGPHLVEALYLVCGERGFFYTPKSRREVED Sheep PQVGALELAGGP--G---AGGLEGPPQKRGIVEQCCAGVCSLYQLENYCN OwlMonkey LQVGQVELGGGSITGSLPP--LEGPMQKRGVVDQCCTSICSLYQLQNYCN Chimp LQVGQVELGGGPGAGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN Dog LQVRDVELAGAPGEGGLQPLALEGALQKRGIVEQCCTSICSLYQLENYCN Pig PQAGAVELGGGL--GGLQALALEGPPQKRGIVEQCCTSICSLYQLENYCN GuineaPig PQVEQTELGMGLGAGGLQPLALEMALQKRGIVDQCCTGTCTRHQLQSYCN GreenMonkey PQVGQVELGGGPGAGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN Human LQVGQVELGGGPGAGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN Chicken PLVSSPLRGEA---GVLPFQQEEYEKVKRGIVEQCCHNTCSLYQLENYCN Mouse PQVEQLELGGSP--GDLQTLALEVARQKRGIVDQCCTSICSLYQLENYCN
If you need help regarding technical issues (e.g. errors or missing results) contact Technical Support. Please include the name of the service and version (e.g. NetPhos-4.0). If the error occurs after the job has started running, please include the JOB ID (the long code that you see while the job is running).
If you have scientific questions (e.g. how the method works or how to interpret results), contact Correspondence.
Correspondence:
Technical Support: