Seq2Logo - 2.0

Sequence logo generator

Seq2Logo is a web-based sequence logo generation method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion.

Note that Seq2Logo as default includes a pseudo count correction for lowcounts. This means that the amino acid frequencies displayed in the sequence logos are corrected for low number of observations using a Blosum amino acid similarity matrix. To turn this feature off, the Weight on prior must be set to zero.


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