OligoWiz is implemented as a client-server solution, which consist of an easy to use Graphical User Interface (the client - written in Java) which delegates the computationally intensive operations to a server (which by default is hosted at CBS on a powerfull Multi-CPU SGI UNIX server). All the user needs to do is to download and start the GUI.
The client is written in Java 1.3.1 with portability in mind. It is tested on MacOS X, Linux and Windows, but should work on any platform with Java 1.3.1 or better. The client communicates with server using the HTTP protocol.
Example screenshot form the client program
Instructions | Article abstract | Databases |
New version: v.1.0.8 (9th of April , 2003) - view changes.
The most recent version of the OligoWiz client can be downloaded
here as a Java Archive (JAR). |
java -jar OligoWiz.jar
at
the command prompt (Unix).
Out of Memory!
If you run large sets of sequences on OligoWiz you may experience memory problems.
In most cases this can be fixed by executing OligoWiz in the following way (in a prompt):
java -jar -Xmx300m OligoWiz.jar
Where "300m" is the maximum amount of memory allocated by OligoWiz.jar (300 megabytes)
HTTP proxy:
In order to set up OligoWiz to access our server through a proxy, the proxy parameters
need to be parsed to the JVM on the command prompt:
java -jar -Dhttp.proxyHost=proxyhost -Dhttp.proxyPort=portNumber
OligoWiz.jar
(Put in you relevant proxyhost/port number).
Java: A suitable version of Java (choose J2SE version 1.3.1 or newer) can be downloaded here:
For publication of results, please cite:
Design of oligonucleotides for microarrays and perspectives for design
of multi-transcriptome arrays.
Henrik Bjørn Nielsen, Rasmus Wernersson and Steen Knudsen.
Nucleic Acids Research, 2003, Vol. 31, No. 13 3491-3496
Would you prefer to run the OligoWiz server at your own site? OligoWiz 1.0 server is available as a package on a commercial license. Send inquiries by e-mail to software@cbs.dtu.dk.